目录

  • 1 第一单元
    • 1.1 晶体衍射实验实践指导
    • 1.2 晶体学介绍
  • 2 晶体上样操作
    • 2.1 衍射实验-晶体上样及对心介绍
    • 2.2 晶体样品装样过程
    • 2.3 显微镜下的晶体挑选
    • 2.4 Synergy仪器的开关门及上样
    • 2.5 FRX仪器的开关门及上样
    • 2.6 大分子晶体预先冷冻上样方法
    • 2.7 晶体对心过程
  • 3 数据收集软件操作
    • 3.1 CrysAlispro-小分子数据采集
    • 3.2 CrysAlispro-大分子晶体粗筛设置
    • 3.3 晶体衍射实验仪器操作
    • 3.4 晶体衍射数据质量判定
  • 4 结构解析和精修
    • 4.1 结构解析介绍
    • 4.2 分析软件安装
    • 4.3 结构解析操作
    • 4.4 checkcif report生成
    • 4.5 CIF文件生成晶体学数据表
    • 4.6 蛋白晶体数据处理
    • 4.7 晶面指标化
    • 4.8 移除无序部分,保存为有序结构
    • 4.9 去除精修的限制命令
  • 5 checkcif回复及其修正
    • 5.1 412_ALERT_2_B修正
    • 5.2 PLAT342_ALERT_3_B回复
    • 5.3 THETM01_ALERT_3_A
    • 5.4 PLAT029_ALERT_3_A
    • 5.5 PLAT910_ALERT_3_B
    • 5.6 VRF回复方法
  • 6 审稿人意见回复案例
    • 6.1 实际案例1-限制与对称
  • 7 虚拟仿真实验
    • 7.1 虚拟仿真实验体验介绍
    • 7.2 虚拟仿真实验体验项目
  • 8 FAQ常见问题
    • 8.1 如何查看晶体结构?
    • 8.2 TwinRot不正常工作
    • 8.3 twin检测
    • 8.4 OLEX多个溶剂分子的输入格式
    • 8.5 如何生成二维衍射图片
    • 8.6 如何判断预实验结果的好坏?
  • 9 结晶实验操作
    • 9.1 结晶实验-结晶机器人操作
      • 9.1.1 结晶机器人操作
      • 9.1.2 结晶机器人关机步骤
      • 9.1.3 LCP设置不当与96板运行
      • 9.1.4 仪器未按照流程关机事故
  • 10 JAN UVEX-P 操作
    • 10.1 UVEX - P 操作步骤
PLAT029_ALERT_3_A

PLAT029_ALERT_3_A_diffrn_measured_fraction_theta_full value Low .      0.896 Why? 

 

PLAT029 Type_3 Check the reported_diffrn_measured_fraction_theta_full


 Ideally (and a requirementfor publication in Acta Crystallographica),

 this fraction should beclose to 1.0 for theta-full greater or equal  

 to sin(theta/lambda) = 0.6(i.e. 25.24 degrees for MoKa and 67.7 degrees  

 for CuKa  radiation). 

 The three major causes ofincomplete data sets are:

 1 - A missing cusp of datadue to data collection by rotation around  

     the spindle axis only(standard on some image-plate systems). 

     Cure: collect anadditional data set after remounting the crystal.

 2 - The DENZOimageprocessing package has problems with certain strong

     reflections. They areoften excluded from the data set.

     Cure: Add an additionalscan at lower power setting in order to

     include strong loworder reflections. 

 3 - Incomplete scans,possibly based on erroneously assumed higher than

     actual symmetry.  

 Note: The default value of_diffrn_measured_fraction_theta_full that  

 is automatically calculatedand inserted in the CIF by SHELXL-97 might

 generate A-level ALERTSwhen significant numbers of reflections are

 missing at higher thetavalues. In order to avoid such an ALERT,  

 substitute the valuescalculated with the SHELXL instruction 'ACTA 50'

 for _diffrn_reflns_theta_fulland _diffrn_measured_fraction_theta_full

 respectively. ForMo-radiation, corresponding values of 25 degees (or 

 higher) and 0.99 (orhigher) are expected. (See SHELXL manual).

 PLATON may be used toanalyse the case at hand (by invoking either the

 'FCF-VALIDATION' mode orthe 'ASYM-VIEW' mode).